PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00135488001
Common NameBn9CON10, GSBRNA2T00135488001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 369aa    MW: 41929.6 Da    PI: 7.8219
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00135488001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.4e-062062440
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         r C+++++   + +C+ ++ +lC++C  + H+       H++v
  GSBRNA2T00135488001 20 RACDTCGSTICTVYCHADSAYLCNSCDAQVHSAnrvasrHKRV 62
                         78******99*********************667788888876 PP

2zf-B_box32.32.1e-1061107242
             zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                          + r+C+ +e+ ++ + Ce +++ lC  C le H+       H++vp+
  GSBRNA2T00135488001  61 RVRVCESCERAPAAFMCEADDVSLCTACDLEVHSAnplarrHQRVPV 107
                          5689*****************************66899999*99986 PP

3CCT65.31.8e-22295338144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR++GrF+k +
  GSBRNA2T00135488001 295 REARVLRYREKKKRRKFEKTIRYASRKAYAERRPRINGRFAKIS 338
                          9****************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.2E-91764IPR000315B-box-type zinc finger
PROSITE profilePS5011910.4091764IPR000315B-box-type zinc finger
CDDcd000211.79E-62064No hitNo description
PROSITE profilePS5011911.81860107IPR000315B-box-type zinc finger
PfamPF006432.0E-862107IPR000315B-box-type zinc finger
CDDcd000211.20E-863107No hitNo description
SMARTSM003361.2E-1165107IPR000315B-box-type zinc finger
PfamPF062032.4E-16295336IPR010402CCT domain
PROSITE profilePS5101716.073295337IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MFKQESNNNI CNRENNRGAR ACDTCGSTIC TVYCHADSAY LCNSCDAQVH SANRVASRHK  60
RVRVCESCER APAAFMCEAD DVSLCTACDL EVHSANPLAR RHQRVPVVPI TGNSCSSLAT  120
ANHTTVTEPE KRVVLVQEDA KETASWLFPK NSDNHNNNNN QNNELLFSDD YLDLADYNSS  180
MDYKFTGQYN QPTQHKQDCT VPEKNYGGDR VVPLQLEETR GNLHHKQHNI TYGSSGSHYN  240
NNGSINHNAY NPSMETDFVP EQTAPDKTVS HPKTHKGKIE KLPEPLIQIL SPMDREARVL  300
RYREKKKRRK FEKTIRYASR KAYAERRPRI NGRFAKISET EVEDQEYNTM LMYYDTGYGI  360
VPSFYGQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304308KKKRR
2304309KKKRRK
3305309KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00135488001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0160110.0AF016011.1 Brassica napus CONSTANS homolog (Bn9CON10) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121540.10.0PREDICTED: zinc finger protein CONSTANS
SwissprotQ390570.0CONS_ARATH; Zinc finger protein CONSTANS
TrEMBLO488850.0O48885_BRANA; BnaA10g18430D protein
STRINGBra008669.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.11e-146B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Robert LS,Robson F,Sharpe A,Lydiate D,Coupland G
    Conserved structure and function of the Arabidopsis flowering time gene CONSTANS in Brassica napus.
    Plant Mol. Biol., 1998. 37(5): p. 763-72
    [PMID:9678571]